Master index | Index for .\src

# Index for .\src

## Matlab files in this directory:

Contents | - automatically generated list of SOS m-files
NaNArray | - helper function to generate an empty array
calculateOverlap_Dialog | - calculate overlap dialog
create2samplettest_Dialog | - create 2-sample t-test dialog
createHardBoundConstraint_Dialog | - create hard bound constraint dialog
createMatchCorrelztest_Dialog | - create correlation-matching z-test dialog
createMatchUniformkstest_Dialog | - create uniformity ks-test dialog
createPlots_Dialog | - create sosplots dialog
createPop_Dialog | - create population dialog
createSOS_dialog | - create SOS optimizer dialog
createSample_Dialog | - create sample dialog
createSingleSampleSoftDistanceConstraint_Dialog | - create single sample soft distance constraint dialog
createSoftEntropyConstraint_Dialog | - create soft entropy constraint dialog
createSoftMatchCorrelDistanceConstraint_Dialog | - create soft match correlation constraint dialog
createSoftMetaConstraint_Dialog | - create soft meta-constraint dialog
createTwoSampleSoftDistanceConstraint_Dialog | - create two sample soft distance constraint dialog
createsinglesamplettest_Dialog | - create single sample t-test dialog
dataFrame | - dataframe object
expAnneal | - exponentially-decaying temperature annealing object
expAnneal_Dialog | - create expAnneal dialog
genericAnneal | - abstract interface for annealing objects
genericConstraint | - parent class for constraints
genericFeederCandidateSelection | - parent class for replacement selection objects
genericPopulationCandidateSelection | - parent class for replacement item selection
genericSampleCandidateSelection | - generic method for sample selection objects
genericStatTest | - parent class for statistical test objects
genericpSwapFunction | - parent class for swap probability objects
getPopupMenuName | - retrieves the popup menu name in the GUI
getdfName | - extracts a dataframe name selected in the GUI
greedyAnneal | - greedy annealing (i.e., T = 0) object
hardBoundConstraint | - hard bound constraint object
hardConstraint | - parent class for hard constraints
initVerbosePrint | - initializes the flags which control the verbosity of output
logisticpSwapFunction | - swap function based on the logistic curve
maxpDecrease_Dialog | dialog used for calculating the largest p-decrease value
nullArray | - helper function to generate a null array
numSteps_Dialog | dialog used to calculate the nubmer of temperature-lowering steps
openDoors | - tries to open the pod bay doors
plt | - plt package by Paul Mennen
population | - population object
randPopulationAndSampleCandidateSelection | - random population and sample selection method for swaps
randPopulationCandidateSelection | - random population selection method for selecting swaps
randSampleCandidateSelection | - random sample method for selecting swaps
sample | - sample object
saveHistory_Dialog | - dialog used to save the optimization history
seconds2human | - human readable time output
setBufferedHistoryOutfile_Dialog | - dialog for setting output file for buffered history output
setSeed | - function for setting the seed for the random number generator
setSeed_Dialog | - dialog for setting the random seed
setVerbosePrintVerbosity | - function for setting the verbosity of the SOS software cmd line output
setVerbosity | - function for setting the verbosity for specific types of output
softConstraint | - parent class for soft constraints
softDistanceConstraint | - parent class for soft distance constraints
softEntropyConstraint | - soft entropy constraint object
softMatchCorrelConstraint | - soft correlation matching constraint object
softMetaConstraint | - parent class for soft meta-constraints
sos | - SOS optimization object
sosCorrelTest | - test for equivalence of two correlations
sosHistory | - object for storing the detailed history of an optimization
sosPlots | - object used to create detailed plots of SOS optimization
sos_gui | - sos main GUI
soskstest | - object for testing normality using a Kolmogorov-Smirnov test
sosttest | - object for creating t-tests
validFileName | - helper function to validate that a string represents a valid file name
validFileNameOrNull | - helper function to validate that a string represents a valid file name or null
validLogical | - helper function to validate that a string represents a logical operator
validString | - helper function to validate that a variable represents a valid string
validStringOrNull | - helper function to validate that a string represents a valid string or null
validateCorrel | - helper function to validate that a string represents a correlation
validatePositiveInteger | - helper function to validate that a string represents a positive integer
validateProbability | - helper function to validate that a string represents a probability
validateRealNumber | - helper function to validate that a string represents a real number
verbosePrint | - master print function that regulates cmd line output based on verbosity flags